| install_R_package |
1 |
|
|
|
| multiqc |
1 |
- results/qc/hg38/multiqc.html
|
|
- multiqc ==1.2
- networkx <2.0
|
| edegR_deg |
30 |
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQ_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQ_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQ_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQ_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQ_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQ_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQ_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQ_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQ_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQ_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQ_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQ_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQ_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQ_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQ_edegR_Res.rds
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_NSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_NSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_NSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-NSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-NSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-NSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_HSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_HSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_HSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_HSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_HSQ-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/unique/count_NSQsi-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/unique/count_NSQsi-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/unique/count_NSQsi-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQsi-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/fraction/count_NSQsi-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/fraction/count_NSQsi-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/all/count_NSQsi-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/all/count_NSQsi-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/all/count_NSQsi-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQsi-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQsi-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonAlignment/estcount_NSQsi-vs-HSQsi_edegR_Res.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQsi-vs-HSQsi_edegR_ResData.rds
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQsi-vs-HSQsi_edegR_Res.csv
- results/deg/edegR/hg38/PE/salmonReads/estcount_NSQsi-vs-HSQsi_edegR_Res.rds
|
|
|
| edegR_plot_global |
5 |
- results/plot/edegR/hg38_PE_unique_count_edegR_plot_MDS.png
- results/plot/edegR/hg38_PE_unique_count_edegR_plot_PCA.png
- results/plot/edegR/hg38_PE_unique_count_edegR_plot_biotype.png
- results/plot/edegR/hg38_PE_fraction_count_edegR_plot_MDS.png
- results/plot/edegR/hg38_PE_fraction_count_edegR_plot_PCA.png
- results/plot/edegR/hg38_PE_fraction_count_edegR_plot_biotype.png
- results/plot/edegR/hg38_PE_all_count_edegR_plot_MDS.png
- results/plot/edegR/hg38_PE_all_count_edegR_plot_PCA.png
- results/plot/edegR/hg38_PE_all_count_edegR_plot_biotype.png
- results/plot/edegR/hg38_PE_salmonAlignment_estcount_edegR_plot_MDS.png
- results/plot/edegR/hg38_PE_salmonAlignment_estcount_edegR_plot_PCA.png
- results/plot/edegR/hg38_PE_salmonAlignment_estcount_edegR_plot_biotype.png
- results/plot/edegR/hg38_PE_salmonReads_estcount_edegR_plot_MDS.png
- results/plot/edegR/hg38_PE_salmonReads_estcount_edegR_plot_PCA.png
- results/plot/edegR/hg38_PE_salmonReads_estcount_edegR_plot_biotype.png
|
|
|
| build_R_package |
1 |
|
|
|
| cutadapt_pe |
16 |
- results/trimmed/cutadapt/MK_1-NSQ_1.1.fastq.gz
- results/trimmed/cutadapt/MK_1-NSQ_1.2.fastq.gz
- results/trimmed/cutadapt/MK_1-NSQ_1.qc.txt
- results/trimmed/cutadapt/MK_2-NSQsi_1.1.fastq.gz
- results/trimmed/cutadapt/MK_2-NSQsi_1.2.fastq.gz
- results/trimmed/cutadapt/MK_2-NSQsi_1.qc.txt
- results/trimmed/cutadapt/MK_3-HSQ_1.1.fastq.gz
- results/trimmed/cutadapt/MK_3-HSQ_1.2.fastq.gz
- results/trimmed/cutadapt/MK_3-HSQ_1.qc.txt
- results/trimmed/cutadapt/MK_4-HSQsi_1.1.fastq.gz
- results/trimmed/cutadapt/MK_4-HSQsi_1.2.fastq.gz
- results/trimmed/cutadapt/MK_4-HSQsi_1.qc.txt
- results/trimmed/cutadapt/MK_5-NSQ_2.1.fastq.gz
- results/trimmed/cutadapt/MK_5-NSQ_2.2.fastq.gz
- results/trimmed/cutadapt/MK_5-NSQ_2.qc.txt
- results/trimmed/cutadapt/MK_6-NSQsi_2.1.fastq.gz
- results/trimmed/cutadapt/MK_6-NSQsi_2.2.fastq.gz
- results/trimmed/cutadapt/MK_6-NSQsi_2.qc.txt
- results/trimmed/cutadapt/MK_7-HSQ_2.1.fastq.gz
- results/trimmed/cutadapt/MK_7-HSQ_2.2.fastq.gz
- results/trimmed/cutadapt/MK_7-HSQ_2.qc.txt
- results/trimmed/cutadapt/MK_8-HSQsi_2.1.fastq.gz
- results/trimmed/cutadapt/MK_8-HSQsi_2.2.fastq.gz
- results/trimmed/cutadapt/MK_8-HSQsi_2.qc.txt
- results/trimmed/cutadapt/MK_9-NSQ_3.1.fastq.gz
- results/trimmed/cutadapt/MK_9-NSQ_3.2.fastq.gz
- results/trimmed/cutadapt/MK_9-NSQ_3.qc.txt
- results/trimmed/cutadapt/MK_10-NSQsi_3.1.fastq.gz
- results/trimmed/cutadapt/MK_10-NSQsi_3.2.fastq.gz
- results/trimmed/cutadapt/MK_10-NSQsi_3.qc.txt
- results/trimmed/cutadapt/MK_11-HSQ_3.1.fastq.gz
- results/trimmed/cutadapt/MK_11-HSQ_3.2.fastq.gz
- results/trimmed/cutadapt/MK_11-HSQ_3.qc.txt
- results/trimmed/cutadapt/MK_12-HSQsi_3.1.fastq.gz
- results/trimmed/cutadapt/MK_12-HSQsi_3.2.fastq.gz
- results/trimmed/cutadapt/MK_12-HSQsi_3.qc.txt
- results/trimmed/cutadapt/MK_13-NSQ_4.1.fastq.gz
- results/trimmed/cutadapt/MK_13-NSQ_4.2.fastq.gz
- results/trimmed/cutadapt/MK_13-NSQ_4.qc.txt
- results/trimmed/cutadapt/MK_14-NSQsi_4.1.fastq.gz
- results/trimmed/cutadapt/MK_14-NSQsi_4.2.fastq.gz
- results/trimmed/cutadapt/MK_14-NSQsi_4.qc.txt
- results/trimmed/cutadapt/MK_15-HSQ_4.1.fastq.gz
- results/trimmed/cutadapt/MK_15-HSQ_4.2.fastq.gz
- results/trimmed/cutadapt/MK_15-HSQ_4.qc.txt
- results/trimmed/cutadapt/MK_16-HSQsi_4.1.fastq.gz
- results/trimmed/cutadapt/MK_16-HSQsi_4.2.fastq.gz
- results/trimmed/cutadapt/MK_16-HSQsi_4.qc.txt
|
|
|
| samtools_stats |
16 |
- results/qc/samtools-stats/hg38/MK_1-NSQ_1.txt
- results/qc/samtools-stats/hg38/MK_2-NSQsi_1.txt
- results/qc/samtools-stats/hg38/MK_3-HSQ_1.txt
- results/qc/samtools-stats/hg38/MK_4-HSQsi_1.txt
- results/qc/samtools-stats/hg38/MK_5-NSQ_2.txt
- results/qc/samtools-stats/hg38/MK_6-NSQsi_2.txt
- results/qc/samtools-stats/hg38/MK_7-HSQ_2.txt
- results/qc/samtools-stats/hg38/MK_8-HSQsi_2.txt
- results/qc/samtools-stats/hg38/MK_9-NSQ_3.txt
- results/qc/samtools-stats/hg38/MK_10-NSQsi_3.txt
- results/qc/samtools-stats/hg38/MK_11-HSQ_3.txt
- results/qc/samtools-stats/hg38/MK_12-HSQsi_3.txt
- results/qc/samtools-stats/hg38/MK_13-NSQ_4.txt
- results/qc/samtools-stats/hg38/MK_14-NSQsi_4.txt
- results/qc/samtools-stats/hg38/MK_15-HSQ_4.txt
- results/qc/samtools-stats/hg38/MK_16-HSQsi_4.txt
|
|
|
| fastqc_q1 |
16 |
- results/qc/fastqc/MK_1-NSQ_1_R1.html
- results/qc/fastqc/MK_1-NSQ_1_R1_fastqc.zip
- results/qc/fastqc/MK_2-NSQsi_1_R1.html
- results/qc/fastqc/MK_2-NSQsi_1_R1_fastqc.zip
- results/qc/fastqc/MK_3-HSQ_1_R1.html
- results/qc/fastqc/MK_3-HSQ_1_R1_fastqc.zip
- results/qc/fastqc/MK_4-HSQsi_1_R1.html
- results/qc/fastqc/MK_4-HSQsi_1_R1_fastqc.zip
- results/qc/fastqc/MK_5-NSQ_2_R1.html
- results/qc/fastqc/MK_5-NSQ_2_R1_fastqc.zip
- results/qc/fastqc/MK_6-NSQsi_2_R1.html
- results/qc/fastqc/MK_6-NSQsi_2_R1_fastqc.zip
- results/qc/fastqc/MK_7-HSQ_2_R1.html
- results/qc/fastqc/MK_7-HSQ_2_R1_fastqc.zip
- results/qc/fastqc/MK_8-HSQsi_2_R1.html
- results/qc/fastqc/MK_8-HSQsi_2_R1_fastqc.zip
- results/qc/fastqc/MK_9-NSQ_3_R1.html
- results/qc/fastqc/MK_9-NSQ_3_R1_fastqc.zip
- results/qc/fastqc/MK_10-NSQsi_3_R1.html
- results/qc/fastqc/MK_10-NSQsi_3_R1_fastqc.zip
- results/qc/fastqc/MK_11-HSQ_3_R1.html
- results/qc/fastqc/MK_11-HSQ_3_R1_fastqc.zip
- results/qc/fastqc/MK_12-HSQsi_3_R1.html
- results/qc/fastqc/MK_12-HSQsi_3_R1_fastqc.zip
- results/qc/fastqc/MK_13-NSQ_4_R1.html
- results/qc/fastqc/MK_13-NSQ_4_R1_fastqc.zip
- results/qc/fastqc/MK_14-NSQsi_4_R1.html
- results/qc/fastqc/MK_14-NSQsi_4_R1_fastqc.zip
- results/qc/fastqc/MK_15-HSQ_4_R1.html
- results/qc/fastqc/MK_15-HSQ_4_R1_fastqc.zip
- results/qc/fastqc/MK_16-HSQsi_4_R1.html
- results/qc/fastqc/MK_16-HSQsi_4_R1_fastqc.zip
|
|
- fastqc ==0.11.5
- fontconfig ==2.12.1
|
| fastqc_q2 |
16 |
- results/qc/fastqc/MK_1-NSQ_1_R2.html
- results/qc/fastqc/MK_1-NSQ_1_R2_fastqc.zip
- results/qc/fastqc/MK_2-NSQsi_1_R2.html
- results/qc/fastqc/MK_2-NSQsi_1_R2_fastqc.zip
- results/qc/fastqc/MK_3-HSQ_1_R2.html
- results/qc/fastqc/MK_3-HSQ_1_R2_fastqc.zip
- results/qc/fastqc/MK_4-HSQsi_1_R2.html
- results/qc/fastqc/MK_4-HSQsi_1_R2_fastqc.zip
- results/qc/fastqc/MK_5-NSQ_2_R2.html
- results/qc/fastqc/MK_5-NSQ_2_R2_fastqc.zip
- results/qc/fastqc/MK_6-NSQsi_2_R2.html
- results/qc/fastqc/MK_6-NSQsi_2_R2_fastqc.zip
- results/qc/fastqc/MK_7-HSQ_2_R2.html
- results/qc/fastqc/MK_7-HSQ_2_R2_fastqc.zip
- results/qc/fastqc/MK_8-HSQsi_2_R2.html
- results/qc/fastqc/MK_8-HSQsi_2_R2_fastqc.zip
- results/qc/fastqc/MK_9-NSQ_3_R2.html
- results/qc/fastqc/MK_9-NSQ_3_R2_fastqc.zip
- results/qc/fastqc/MK_10-NSQsi_3_R2.html
- results/qc/fastqc/MK_10-NSQsi_3_R2_fastqc.zip
- results/qc/fastqc/MK_11-HSQ_3_R2.html
- results/qc/fastqc/MK_11-HSQ_3_R2_fastqc.zip
- results/qc/fastqc/MK_12-HSQsi_3_R2.html
- results/qc/fastqc/MK_12-HSQsi_3_R2_fastqc.zip
- results/qc/fastqc/MK_13-NSQ_4_R2.html
- results/qc/fastqc/MK_13-NSQ_4_R2_fastqc.zip
- results/qc/fastqc/MK_14-NSQsi_4_R2.html
- results/qc/fastqc/MK_14-NSQsi_4_R2_fastqc.zip
- results/qc/fastqc/MK_15-HSQ_4_R2.html
- results/qc/fastqc/MK_15-HSQ_4_R2_fastqc.zip
- results/qc/fastqc/MK_16-HSQsi_4_R2.html
- results/qc/fastqc/MK_16-HSQsi_4_R2_fastqc.zip
|
|
- fastqc ==0.11.5
- fontconfig ==2.12.1
|
| featureCounts |
48 |
- results/quantification/featureCounts/hg38/PE/unique/MK_1-NSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_1-NSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_2-NSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_2-NSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_3-HSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_3-HSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_4-HSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_4-HSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_5-NSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_5-NSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_6-NSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_6-NSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_7-HSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_7-HSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_8-HSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_8-HSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_9-NSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_9-NSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_10-NSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_10-NSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_11-HSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_11-HSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_12-HSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_12-HSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_13-NSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_13-NSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_14-NSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_14-NSQsi_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_15-HSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_15-HSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/unique/MK_16-HSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/unique/MK_16-HSQsi_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_1-NSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_1-NSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_2-NSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_2-NSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_3-HSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_3-HSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_4-HSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_4-HSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_5-NSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_5-NSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_6-NSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_6-NSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_7-HSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_7-HSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_8-HSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_8-HSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_9-NSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_9-NSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_10-NSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_10-NSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_11-HSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_11-HSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_12-HSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_12-HSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_13-NSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_13-NSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_14-NSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_14-NSQsi_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_15-HSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_15-HSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/fraction/MK_16-HSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/fraction/MK_16-HSQsi_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_1-NSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_1-NSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_2-NSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_2-NSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_3-HSQ_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_3-HSQ_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_4-HSQsi_1/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_4-HSQsi_1/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_5-NSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_5-NSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_6-NSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_6-NSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_7-HSQ_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_7-HSQ_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_8-HSQsi_2/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_8-HSQsi_2/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_9-NSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_9-NSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_10-NSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_10-NSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_11-HSQ_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_11-HSQ_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_12-HSQsi_3/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_12-HSQsi_3/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_13-NSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_13-NSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_14-NSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_14-NSQsi_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_15-HSQ_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_15-HSQ_4/feature_counts.result.summary
- results/quantification/featureCounts/hg38/PE/all/MK_16-HSQsi_4/feature_counts.result
- results/quantification/featureCounts/hg38/PE/all/MK_16-HSQsi_4/feature_counts.result.summary
|
|
|
| FeatCountSummarySetType |
3 |
- results/quantification/counts/hg38/PE/unique/count.csv
- results/quantification/counts/hg38/PE/unique/count.rds
- results/quantification/counts/hg38/PE/fraction/count.csv
- results/quantification/counts/hg38/PE/fraction/count.rds
- results/quantification/counts/hg38/PE/all/count.csv
- results/quantification/counts/hg38/PE/all/count.rds
|
|
|
| TximportData |
2 |
- results/quantification/counts/hg38/PE/salmonAlignment/estcount.rds
- results/quantification/counts/hg38/PE/salmonReads/estcount.rds
|
|
|
| sambamba_sort |
16 |
- results/mapping/star/hg38/MK_1-NSQ_1/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_2-NSQsi_1/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_3-HSQ_1/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_4-HSQsi_1/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_5-NSQ_2/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_6-NSQsi_2/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_7-HSQ_2/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_8-HSQsi_2/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_9-NSQ_3/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_10-NSQsi_3/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_11-HSQ_3/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_12-HSQsi_3/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_13-NSQ_4/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_14-NSQsi_4/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_15-HSQ_4/Aligned.out.sorted.bam
- results/mapping/star/hg38/MK_16-HSQsi_4/Aligned.out.sorted.bam
|
|
|
| TximporTrGe |
1 |
- results/quantification/counts/hg38/TrGe.csv
- results/quantification/counts/hg38/TrGe.rds
|
|
|
| salmon_quant_alignment |
16 |
- results/quantification/salmonAlignment/hg38/MK_1-NSQ_1/quant.sf
- results/quantification/salmonAlignment/hg38/MK_2-NSQsi_1/quant.sf
- results/quantification/salmonAlignment/hg38/MK_3-HSQ_1/quant.sf
- results/quantification/salmonAlignment/hg38/MK_4-HSQsi_1/quant.sf
- results/quantification/salmonAlignment/hg38/MK_5-NSQ_2/quant.sf
- results/quantification/salmonAlignment/hg38/MK_6-NSQsi_2/quant.sf
- results/quantification/salmonAlignment/hg38/MK_7-HSQ_2/quant.sf
- results/quantification/salmonAlignment/hg38/MK_8-HSQsi_2/quant.sf
- results/quantification/salmonAlignment/hg38/MK_9-NSQ_3/quant.sf
- results/quantification/salmonAlignment/hg38/MK_10-NSQsi_3/quant.sf
- results/quantification/salmonAlignment/hg38/MK_11-HSQ_3/quant.sf
- results/quantification/salmonAlignment/hg38/MK_12-HSQsi_3/quant.sf
- results/quantification/salmonAlignment/hg38/MK_13-NSQ_4/quant.sf
- results/quantification/salmonAlignment/hg38/MK_14-NSQsi_4/quant.sf
- results/quantification/salmonAlignment/hg38/MK_15-HSQ_4/quant.sf
- results/quantification/salmonAlignment/hg38/MK_16-HSQsi_4/quant.sf
|
|
|
| salmon_quant_reads |
16 |
- results/quantification/salmonReads/hg38/MK_1-NSQ_1/quant.sf
- results/quantification/salmonReads/hg38/MK_1-NSQ_1/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_2-NSQsi_1/quant.sf
- results/quantification/salmonReads/hg38/MK_2-NSQsi_1/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_3-HSQ_1/quant.sf
- results/quantification/salmonReads/hg38/MK_3-HSQ_1/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_4-HSQsi_1/quant.sf
- results/quantification/salmonReads/hg38/MK_4-HSQsi_1/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_5-NSQ_2/quant.sf
- results/quantification/salmonReads/hg38/MK_5-NSQ_2/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_6-NSQsi_2/quant.sf
- results/quantification/salmonReads/hg38/MK_6-NSQsi_2/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_7-HSQ_2/quant.sf
- results/quantification/salmonReads/hg38/MK_7-HSQ_2/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_8-HSQsi_2/quant.sf
- results/quantification/salmonReads/hg38/MK_8-HSQsi_2/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_9-NSQ_3/quant.sf
- results/quantification/salmonReads/hg38/MK_9-NSQ_3/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_10-NSQsi_3/quant.sf
- results/quantification/salmonReads/hg38/MK_10-NSQsi_3/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_11-HSQ_3/quant.sf
- results/quantification/salmonReads/hg38/MK_11-HSQ_3/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_12-HSQsi_3/quant.sf
- results/quantification/salmonReads/hg38/MK_12-HSQsi_3/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_13-NSQ_4/quant.sf
- results/quantification/salmonReads/hg38/MK_13-NSQ_4/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_14-NSQsi_4/quant.sf
- results/quantification/salmonReads/hg38/MK_14-NSQsi_4/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_15-HSQ_4/quant.sf
- results/quantification/salmonReads/hg38/MK_15-HSQ_4/lib_format_counts.json
- results/quantification/salmonReads/hg38/MK_16-HSQsi_4/quant.sf
- results/quantification/salmonReads/hg38/MK_16-HSQsi_4/lib_format_counts.json
|
|
|
| star |
16 |
- results/mapping/star/hg38/MK_1-NSQ_1/Aligned.out.bam
- results/mapping/star/hg38/MK_1-NSQ_1/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_1-NSQ_1/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_2-NSQsi_1/Aligned.out.bam
- results/mapping/star/hg38/MK_2-NSQsi_1/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_2-NSQsi_1/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_3-HSQ_1/Aligned.out.bam
- results/mapping/star/hg38/MK_3-HSQ_1/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_3-HSQ_1/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_4-HSQsi_1/Aligned.out.bam
- results/mapping/star/hg38/MK_4-HSQsi_1/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_4-HSQsi_1/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_5-NSQ_2/Aligned.out.bam
- results/mapping/star/hg38/MK_5-NSQ_2/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_5-NSQ_2/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_6-NSQsi_2/Aligned.out.bam
- results/mapping/star/hg38/MK_6-NSQsi_2/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_6-NSQsi_2/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_7-HSQ_2/Aligned.out.bam
- results/mapping/star/hg38/MK_7-HSQ_2/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_7-HSQ_2/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_8-HSQsi_2/Aligned.out.bam
- results/mapping/star/hg38/MK_8-HSQsi_2/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_8-HSQsi_2/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_9-NSQ_3/Aligned.out.bam
- results/mapping/star/hg38/MK_9-NSQ_3/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_9-NSQ_3/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_10-NSQsi_3/Aligned.out.bam
- results/mapping/star/hg38/MK_10-NSQsi_3/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_10-NSQsi_3/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_11-HSQ_3/Aligned.out.bam
- results/mapping/star/hg38/MK_11-HSQ_3/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_11-HSQ_3/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_12-HSQsi_3/Aligned.out.bam
- results/mapping/star/hg38/MK_12-HSQsi_3/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_12-HSQsi_3/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_13-NSQ_4/Aligned.out.bam
- results/mapping/star/hg38/MK_13-NSQ_4/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_13-NSQ_4/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_14-NSQsi_4/Aligned.out.bam
- results/mapping/star/hg38/MK_14-NSQsi_4/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_14-NSQsi_4/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_15-HSQ_4/Aligned.out.bam
- results/mapping/star/hg38/MK_15-HSQ_4/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_15-HSQ_4/Aligned.toTranscriptome.out.bam
- results/mapping/star/hg38/MK_16-HSQsi_4/Aligned.out.bam
- results/mapping/star/hg38/MK_16-HSQsi_4/ReadsPerGene.out.tab
- results/mapping/star/hg38/MK_16-HSQsi_4/Aligned.toTranscriptome.out.bam
|
|
|
| gzip |
32 |
- results/trimmed/sickle/MK_1-NSQ_1.1.fastq.gz
- results/trimmed/sickle/MK_1-NSQ_1.2.fastq.gz
- results/trimmed/sickle/MK_2-NSQsi_1.1.fastq.gz
- results/trimmed/sickle/MK_2-NSQsi_1.2.fastq.gz
- results/trimmed/sickle/MK_3-HSQ_1.1.fastq.gz
- results/trimmed/sickle/MK_3-HSQ_1.2.fastq.gz
- results/trimmed/sickle/MK_4-HSQsi_1.1.fastq.gz
- results/trimmed/sickle/MK_4-HSQsi_1.2.fastq.gz
- results/trimmed/sickle/MK_5-NSQ_2.1.fastq.gz
- results/trimmed/sickle/MK_5-NSQ_2.2.fastq.gz
- results/trimmed/sickle/MK_6-NSQsi_2.1.fastq.gz
- results/trimmed/sickle/MK_6-NSQsi_2.2.fastq.gz
- results/trimmed/sickle/MK_7-HSQ_2.1.fastq.gz
- results/trimmed/sickle/MK_7-HSQ_2.2.fastq.gz
- results/trimmed/sickle/MK_8-HSQsi_2.1.fastq.gz
- results/trimmed/sickle/MK_8-HSQsi_2.2.fastq.gz
- results/trimmed/sickle/MK_9-NSQ_3.1.fastq.gz
- results/trimmed/sickle/MK_9-NSQ_3.2.fastq.gz
- results/trimmed/sickle/MK_10-NSQsi_3.1.fastq.gz
- results/trimmed/sickle/MK_10-NSQsi_3.2.fastq.gz
- results/trimmed/sickle/MK_11-HSQ_3.1.fastq.gz
- results/trimmed/sickle/MK_11-HSQ_3.2.fastq.gz
- results/trimmed/sickle/MK_12-HSQsi_3.1.fastq.gz
- results/trimmed/sickle/MK_12-HSQsi_3.2.fastq.gz
- results/trimmed/sickle/MK_13-NSQ_4.1.fastq.gz
- results/trimmed/sickle/MK_13-NSQ_4.2.fastq.gz
- results/trimmed/sickle/MK_14-NSQsi_4.1.fastq.gz
- results/trimmed/sickle/MK_14-NSQsi_4.2.fastq.gz
- results/trimmed/sickle/MK_15-HSQ_4.1.fastq.gz
- results/trimmed/sickle/MK_15-HSQ_4.2.fastq.gz
- results/trimmed/sickle/MK_16-HSQsi_4.1.fastq.gz
- results/trimmed/sickle/MK_16-HSQsi_4.2.fastq.gz
|
|
|
| salmon_index |
1 |
- references/hg38/salmon_transcriptome_index
|
|
|
| sickle_pe |
16 |
- results/trimmed/sickle/MK_1-NSQ_1.1.fastq
- results/trimmed/sickle/MK_1-NSQ_1.2.fastq
- results/trimmed/sickle/MK_1-NSQ_1.output_single.fastq
- results/trimmed/sickle/TMP---MK_1-NSQ_1.1.fastq
- results/trimmed/sickle/TMP---MK_1-NSQ_1.2.fastq
- results/trimmed/sickle/MK_2-NSQsi_1.1.fastq
- results/trimmed/sickle/MK_2-NSQsi_1.2.fastq
- results/trimmed/sickle/MK_2-NSQsi_1.output_single.fastq
- results/trimmed/sickle/TMP---MK_2-NSQsi_1.1.fastq
- results/trimmed/sickle/TMP---MK_2-NSQsi_1.2.fastq
- results/trimmed/sickle/MK_3-HSQ_1.1.fastq
- results/trimmed/sickle/MK_3-HSQ_1.2.fastq
- results/trimmed/sickle/MK_3-HSQ_1.output_single.fastq
- results/trimmed/sickle/TMP---MK_3-HSQ_1.1.fastq
- results/trimmed/sickle/TMP---MK_3-HSQ_1.2.fastq
- results/trimmed/sickle/MK_4-HSQsi_1.1.fastq
- results/trimmed/sickle/MK_4-HSQsi_1.2.fastq
- results/trimmed/sickle/MK_4-HSQsi_1.output_single.fastq
- results/trimmed/sickle/TMP---MK_4-HSQsi_1.1.fastq
- results/trimmed/sickle/TMP---MK_4-HSQsi_1.2.fastq
- results/trimmed/sickle/MK_5-NSQ_2.1.fastq
- results/trimmed/sickle/MK_5-NSQ_2.2.fastq
- results/trimmed/sickle/MK_5-NSQ_2.output_single.fastq
- results/trimmed/sickle/TMP---MK_5-NSQ_2.1.fastq
- results/trimmed/sickle/TMP---MK_5-NSQ_2.2.fastq
- results/trimmed/sickle/MK_6-NSQsi_2.1.fastq
- results/trimmed/sickle/MK_6-NSQsi_2.2.fastq
- results/trimmed/sickle/MK_6-NSQsi_2.output_single.fastq
- results/trimmed/sickle/TMP---MK_6-NSQsi_2.1.fastq
- results/trimmed/sickle/TMP---MK_6-NSQsi_2.2.fastq
- results/trimmed/sickle/MK_7-HSQ_2.1.fastq
- results/trimmed/sickle/MK_7-HSQ_2.2.fastq
- results/trimmed/sickle/MK_7-HSQ_2.output_single.fastq
- results/trimmed/sickle/TMP---MK_7-HSQ_2.1.fastq
- results/trimmed/sickle/TMP---MK_7-HSQ_2.2.fastq
- results/trimmed/sickle/MK_8-HSQsi_2.1.fastq
- results/trimmed/sickle/MK_8-HSQsi_2.2.fastq
- results/trimmed/sickle/MK_8-HSQsi_2.output_single.fastq
- results/trimmed/sickle/TMP---MK_8-HSQsi_2.1.fastq
- results/trimmed/sickle/TMP---MK_8-HSQsi_2.2.fastq
- results/trimmed/sickle/MK_9-NSQ_3.1.fastq
- results/trimmed/sickle/MK_9-NSQ_3.2.fastq
- results/trimmed/sickle/MK_9-NSQ_3.output_single.fastq
- results/trimmed/sickle/TMP---MK_9-NSQ_3.1.fastq
- results/trimmed/sickle/TMP---MK_9-NSQ_3.2.fastq
- results/trimmed/sickle/MK_10-NSQsi_3.1.fastq
- results/trimmed/sickle/MK_10-NSQsi_3.2.fastq
- results/trimmed/sickle/MK_10-NSQsi_3.output_single.fastq
- results/trimmed/sickle/TMP---MK_10-NSQsi_3.1.fastq
- results/trimmed/sickle/TMP---MK_10-NSQsi_3.2.fastq
- results/trimmed/sickle/MK_11-HSQ_3.1.fastq
- results/trimmed/sickle/MK_11-HSQ_3.2.fastq
- results/trimmed/sickle/MK_11-HSQ_3.output_single.fastq
- results/trimmed/sickle/TMP---MK_11-HSQ_3.1.fastq
- results/trimmed/sickle/TMP---MK_11-HSQ_3.2.fastq
- results/trimmed/sickle/MK_12-HSQsi_3.1.fastq
- results/trimmed/sickle/MK_12-HSQsi_3.2.fastq
- results/trimmed/sickle/MK_12-HSQsi_3.output_single.fastq
- results/trimmed/sickle/TMP---MK_12-HSQsi_3.1.fastq
- results/trimmed/sickle/TMP---MK_12-HSQsi_3.2.fastq
- results/trimmed/sickle/MK_13-NSQ_4.1.fastq
- results/trimmed/sickle/MK_13-NSQ_4.2.fastq
- results/trimmed/sickle/MK_13-NSQ_4.output_single.fastq
- results/trimmed/sickle/TMP---MK_13-NSQ_4.1.fastq
- results/trimmed/sickle/TMP---MK_13-NSQ_4.2.fastq
- results/trimmed/sickle/MK_14-NSQsi_4.1.fastq
- results/trimmed/sickle/MK_14-NSQsi_4.2.fastq
- results/trimmed/sickle/MK_14-NSQsi_4.output_single.fastq
- results/trimmed/sickle/TMP---MK_14-NSQsi_4.1.fastq
- results/trimmed/sickle/TMP---MK_14-NSQsi_4.2.fastq
- results/trimmed/sickle/MK_15-HSQ_4.1.fastq
- results/trimmed/sickle/MK_15-HSQ_4.2.fastq
- results/trimmed/sickle/MK_15-HSQ_4.output_single.fastq
- results/trimmed/sickle/TMP---MK_15-HSQ_4.1.fastq
- results/trimmed/sickle/TMP---MK_15-HSQ_4.2.fastq
- results/trimmed/sickle/MK_16-HSQsi_4.1.fastq
- results/trimmed/sickle/MK_16-HSQsi_4.2.fastq
- results/trimmed/sickle/MK_16-HSQsi_4.output_single.fastq
- results/trimmed/sickle/TMP---MK_16-HSQsi_4.1.fastq
- results/trimmed/sickle/TMP---MK_16-HSQsi_4.2.fastq
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